PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00236.1.g00310.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 194aa    MW: 21450.9 Da    PI: 6.3538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00236.1.g00310.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383.1e-124694355
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                   +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Zpz_sc00236.1.g00310.1.sm.mk 46 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 94
                                  58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.88E-124198No hitNo description
SuperFamilySSF474592.88E-1741104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1743101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7964393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-94694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-104999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTVLEETAAV SQREVSMERA DEKAGNGDTN REDYVHVRAK RGQATNSHSL AERFRREKIN  60
ERMKLLQDLV PGCNKITGKA MMLDEIINYV QSLQRQVEIL CSQDAVSAFP GYGSQMSNVH  120
LSLYRASNQG FSQGIIPNPA NVQLSAFPQG GVVWDEDLRN MAPESFTSDA GAGSIENSPC  180
RQPMANSRNN AHHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00236.1.g00310.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611992e-92BT061199.1 Zea mays full-length cDNA clone ZM_BFb0121M13 mRNA, complete cds.
GenBankBT0622162e-92BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds.
GenBankEU9636942e-92EU963694.1 Zea mays clone 266050 mRNA sequence.
GenBankKJ7267922e-92KJ726792.1 Zea mays clone pUT2278 bHLH transcription factor (bHLH3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468224.28e-88transcription factor bHLH74 isoform X1
RefseqXP_021317580.18e-88transcription factor bHLH74 isoform X1
RefseqXP_021317585.18e-88transcription factor bHLH74 isoform X1
TrEMBLA0A0A9JML83e-97A0A0A9JML8_ARUDO; Uncharacterized protein
STRINGSb01g042070.13e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-40bHLH family protein