PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00228.1.g00060.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 895aa    MW: 97217 Da    PI: 10.2312
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00228.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57335.62.6e-11569657397
                        DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 
                                   + rlws+eD i +L +l    +++g  p+ d   +   v++s++  + s s+l e++rrLK++++k v+k      +  s+
  Zpz_sc00228.1.g00060.1.am.mk 569 APRLWSKEDSIKVLEALAAHVKSEGRLPKTD--ILLAAVRDSLDrKDCSYSDLYERVRRLKERYEKTVNK-----GVLPSE 642
                                   579*****************99999776665..58999*****72579*********************9.....344456 PP

                        DUF573  83 ehdqkifelskkiWg 97 
                                   e++ ++ +ls+ +Wg
  Zpz_sc00228.1.g00060.1.am.mk 643 EDELQMHNLSEAVWG 657
                                   666789999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.9E-15570657IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MAGCGKMAGA YLILLLVAMA ATSSSSSRAY QLQDLKEEIM HECRFYINKN LGTWNPSDHS  60
VCDQFTEADK EKIEVLKWVK AVRVCRNPLP VGTDCAGYPV PPLRLLGRPH RYTGRTPPRT  120
RSASVSAASP LRCPLVPSPS PAMHAWLPHD GGMSRFCLAW PRHCTLPRTR GAHGLFDNDV  180
CGGRRTAGVE PNRRVRLVLC AGARGRLRSG RAXXXXRAHV GSAAGRSARE GARAGLWQGA  240
PRIRGATCVT VPQMAQRIQG APCGSCNGMR QPEQSISNIV ILIADPAEFP VSAARDMASG  300
LSPARRWRAR WWINLPLALD MGYRDGKKNP PPAVDATVRV SRSLPRFHPT LPFRRQSLAL  360
APMARKRRAP SPAPPPPPPQ ESSSETGSDT EEEEDSPRAA ASKKQPQNPQ LQALAAAANG  420
ADSDADTDAD LQAFQMRRVT RSPAKPGAPT PQPGTDADEE EKDGESSESE PEVPDPVPKK  480
AAVAKKAKAV EEDKKRAAPE AAPSRKGKKV KAEPPASPTG KGKKAKAEPE KPAPEATPSG  540
KAKKPGGKPE KSGLDSTPPS TKSEKSARAP RLWSKEDSIK VLEALAAHVK SEGRLPKTDI  600
LLAAVRDSLD RKDCSYSDLY ERVRRLKERY EKTVNKGVLP SEEDELQMHN LSEAVWGEKA  660
KEAIAAAAAS QNGSTVTDSK KGQANKEKMD GNSRGDTSKE VVNQNGGTRK GGKKGQAINE  720
NPDMDVKRKI FKEDSATGTS NKTKKQGNEK EELGKSVKNG TSNETPTKNG DTLTKRKRGK  780
MVPKEASTDR QNVGSQAEDA THPEEEEIGA AIQGMRRSFD ELQNLYPSLA WSVERMAVQH  840
PCGETLKRAF EFIHDDKANA LESKFKKQRI SDVKVHVRRL DISKEVLNML LSPAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00228.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824313.11e-129recombination repair protein 1-like
TrEMBLA0A3L6QKN41e-136A0A3L6QKN4_PANMI; Hepatoma-derived growth factor-related protein 2-like
STRINGPavir.Ab01142.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737