PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00188.1.g00230.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 334aa    MW: 35986.8 Da    PI: 7.8273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00188.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.7e-1361112255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   + +hn+ Er RR+++N+ ++ Lr+llP+ +   + kK+s  +++ ++ +YI +Lq
  Zpz_sc00188.1.g00230.1.am.mk  61 KLSHNAYERDRRKELNELYSSLRSLLPNdD---HTKKMSIPTTVCRVLKYIPELQ 112
                                   579*************************44...6666***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1557127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.58659111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1161127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1061112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-961115No hitNo description
SMARTSM003538.8E-865117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDDQLFDDHF ASHISALEAD IFSGDQLPWP DLDLDDDNIL QDLAPPAANA SSSGGSGSRS  60
KLSHNAYERD RRKELNELYS SLRSLLPNDD HTKKMSIPTT VCRVLKYIPE LQKEVDSLER  120
KKEELTKANC RKRGNDMNTT ESKTPVVSVT FLNDMEIIVQ VSLLCNLATT TLPLSKCVKV  180
SSASSHDSST APPPGPCTAA AQAPQPPPQA IAHAAASPPP TQAPLLPPQA PLLPLPSTAL  240
LPPQATTTPP PSHFDCPVLD LLFAPPAPLQ QPRRRAATSA TCSCHFPIWS PASATIAGSS  300
SRRAARKAAS VPACCTAHDR TCRFHLACCS RRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00188.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695873.13e-66PREDICTED: transcription factor bHLH100-like
SwissprotA2WZ604e-58IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLJ3L7X47e-65J3L7X4_ORYBR; Uncharacterized protein
STRINGOB01G53300.11e-65(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.11e-24bHLH family protein