PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00187.1.g00600.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 273aa    MW: 29329.6 Da    PI: 9.4544
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00187.1.g00600.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.93.9e-3045119374
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                                   g+kdrhsk+ T +g+RdRRvRlsa++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++  +    
  Zpz_sc00187.1.g00600.1.sm.mk  45 GGKDRHSKVKTVKGLRDRRVRLSAPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDLVvghL 119
                                   78*************************************************************888883333221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.92846104IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-2746108IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MISSNNRQAA DEELARKQHA AVASSRQQWS AQTESRIVRV SRVFGGKDRH SKVKTVKGLR  60
DRRVRLSAPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP PQDLVVGHLP  120
LVHEEKFGHH VAAAAALANE RAKAGHADAD VESGAHHHLG RFPGGYHRFM GLNSSLGMVN  180
SAMAAFNDYS GEAWNNNNVH DSGAGSPHVA AAAAAAAAAA QHSSFPSLLS LAPGPHQQVF  240
YSSEADQQFQ VGNLGSQGLS LSSVRAFHDQ TGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2051105155Putative transcription factor PCF6
5zkt_B8e-2051105155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00187.1.g00600.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855481e-113BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds.
GenBankBT0858131e-113BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds.
GenBankBT0862231e-113BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds.
GenBankEU9702171e-113EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds.
GenBankKJ7280081e-113KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814168.11e-126transcription factor PCF5-like
RefseqXP_025814169.11e-126transcription factor PCF5-like
TrEMBLA0A3L6SMS61e-132A0A3L6SMS6_PANMI; Transcription factor PCF5-like
STRINGPavir.J15913.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-41plastid transcription factor 1