PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00166.1.g00480.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 871aa    MW: 92725.7 Da    PI: 9.1017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00166.1.g00480.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-06383405123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C++ F+r  nL+ H r H
  Zpz_sc00166.1.g00480.1.am.mk 383 FVCEVCNRGFPREQNLQLHRRGH 405
                                   89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-6382405No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4382405IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741383405IPR007087Zinc finger, C2H2
SMARTSM003550.0029383405IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-6454479No hitNo description
SMARTSM00355230459479IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MHPLASHSGR FTAMSAAKTR VEARDPVLPR DVTRSEHQNI QPRPVTSRQC TTGSDAGAAK  60
HDRPHHCQPT VHTNPSDPQL AVPGRPTRVH RGGAHRIFFF RDPRGPRDLL LHLPGHCLRL  120
SLSLSLSPSS AGADAAHILG ERQAALTRES QPLPLRLFLP PGDTLDSEEA EEVGEGEGNK  180
EVGLARLIPS SSGGAVSPDS IPSHGASILP VTSIIICLLF LVVRAISRRL LLRPAWRGTG  240
RVSSVATLLL FPLSAFTRFD FVSAVGRAPP RVCVRACVDR ISQKTPGARR RVGAQCTPCR  300
HLLSVTPDRL VRGFLWARRH ADAATGGGVF PAAAKLRGCR SCRGTKEEEE EPAGQSKQVF  360
FTSNPDAEVI ALSPSTLLAT NRFVCEVCNR GFPREQNLQL HRRGHNLPWR LKQKNPKEAR  420
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCNKLYGV QSDWKAHSKT  480
CGTREYRCDC GKLFSRYPCL DSPFSIDPAN FLAIITIIFF LFFTASESTL GIPTGSREDI  540
ALPASARPHA SFLKDSFITH RAFCDALARE SAQITPLGTG LYVGSGGMAL GVSGGAPQMS  600
AVFGTQAQPS AAAAAQLDHI MASFSSPSLF VSQASASSSS FFLGDGGGPP PSQQDFSEDG  660
DCSQGSQSSH LPHGKTPAGF HGLMQLPEQN QQGSKASGNL LNFGFFSNNS GGAAAGQDAR  720
LVIQDQFNGN TEQRSMTASV GNHLSGNFSF LYNSPGSASA SDLPQNSATA LLLKAAQMGS  780
TTSSNPNCTS ALLRAAGFGG NAQQGNSAAG EGSAADETHF HDLIMNSLAS GSGGTGLDDG  840
KLSTRDFLGV GRGSMAPIGV HMGALDPAQM K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-150AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.11e-159PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_004957599.11e-159PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_004957600.11e-159PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLK3ZSG01e-159K3ZSG0_SETIT; Uncharacterized protein
STRINGSi029540m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2467946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.16e-81indeterminate(ID)-domain 4