PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00158.1.g00570.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 384aa    MW: 42379.4 Da    PI: 7.8069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00158.1.g00570.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05205224120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   + C+ C+k+F+r  n++ H+
  Zpz_sc00158.1.g00570.1.am.mk 205 FICHVCSKTFNRYNNMQMHM 224
                                   89*****************9 PP

2zf-C2H212.20.00054292314123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C  Cgk+F  k + ++H +++
  Zpz_sc00158.1.g00570.1.am.mk 292 FGCRRCGKPFAVKGDWRTHEKNC 314
                                   56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-5196228No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4205224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MESAAGFGVQ FFELLKPSSS PPSSFSSLTT SSSLSTPSID RSVGGSNGGL DTSLCLPLLD  60
RLEERATSPE SDHGRNGNHH IKQELLSNDT TAPNGRSEEA DVELNIGLPA IGGYSSSEDA  120
PMDEEDEEEN TEDSEEDEKP IRQCDEKCKA EGGDDQRARI EMVEGSSDCL RVGGEASMIK  180
GIFTSRGRRF WIPTPAQILV GPVQFICHVC SKTFNRYNNM QMHMWGHGRE YRKGPESLKQ  240
GTQAATVALL KLPCYCCSPG CRNNVSHPRA RPLKDFRTLQ THYKRKHGAK HFGCRRCGKP  300
FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG GGHLPVAPDH QQVTAAAAVP  360
PQPSRQRIIR FDQAAAPWNR NLAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592221e-165AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961925.11e-160PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8W0303e-95ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLK3Z6X61e-160K3Z6X6_SETIT; Uncharacterized protein
STRINGSi022296m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-92WIP domain protein 5