PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00132.1.g00550.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 672aa    MW: 71817.9 Da    PI: 9.8289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00132.1.g00550.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12601646655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Zpz_sc00132.1.g00550.1.am.mk 601 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 646
                                   689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199595645IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15598654IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.04E-13599650No hitNo description
Gene3DG3DSA:4.10.280.102.6E-14600654IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9601646IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-13601651IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MFARSNSATL DSNSDQQQES IFFSGVREQR KTIGAAGDAT RRQIARTRAA HALVNGDLFC  60
VLFISLFVIC LGGGPKEACG RSGSTWKCGA GRTLSFTWAW VVARGLSSQQ WPWAHGGAAK  120
GSLPSPRGGR MAAATSGRAP PPRGHFASLI LVTSAIINSA ELSLPHVTLL TRFPTQHNTA  180
QLSVRSSRTP LLSTVTGAPL HLTDPLPLFF LLLQLLLCYA RISPLSRSSL RLQRARSDRK  240
QQRAREGDVG SNCCRRPLHL VMYGSAVSKD LNQLPDVQPQ PAAAPQMSAP GLLRYRSAPS  300
NLLGELCAEG FHAAGGGAAG HHHRTDHAAD AALTRFHAGN HDDVGDCKPP RPAAAAHFLH  360
DASSMASQQQ HQLVYESQQQ QQHMAAAQMD GFYSYRTLGF RGTEHDANVA AVGSGNSLLR  420
QSSSPAGFLN HLNMDNGYGN MFRVGGMAAG EFRNGGDARL KGQLSYSSRQ GSVMSQISEM  480
GSEELGSGSP EVGSNGGTAA RSYSGIIPAA GGYPMDGGWD DACAAPDQNH LSGAKRSRDP  540
AHAPPVSNGH HLAPQLSLPS GGGCNGKTSA DMAAIEKFLH FQDAVPCKIR AKRGCATHPR  600
SIAERVRRTR ISERIRKLQE LVPNMEKQTN TADMLDLAVD YIKDLQKQVK GLNDGRANCT  660
CSAGKRQNQF TC
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00132.1.g00550.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768151e-107EU976815.1 Zea mays clone 990854 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151233.11e-149uncharacterized protein LOC100284866
TrEMBLA0A0A9VBR81e-167A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGGRMZM2G085467_P021e-148(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-41bHLH family protein