PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00127.1.g00260.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 574aa    MW: 62256 Da    PI: 11.3961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00127.1.g00260.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.1e-05386409326
                                   HHHHHHHHHHHHHHHHHHHHHHCT CS
                           HLH   3 rahnerErrRRdriNsafeeLrel 26 
                                   r+h e+E+rRR+ri+s +++Lr +
  Zpz_sc00127.1.g00260.1.am.mk 386 RNHREAEKRRRERIKSHLDRLRNI 409
                                   78********************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.0E-7386432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MPAKPKRFVK ATPLVQRAIV TSPGDRWEKG SRDALASRIM VITAFRLRLI FRAPFLENCS  60
RNNFPRKVLL TISGSSWKDR SRSVIHNVMC GRARFCAASA SPPRLRSHRN RKNKKPPAGR  120
DGGRRPSRFV ASGAAERPPA RFNSGMAGRS GPVAARKLET GNFAHDVMEM GLQGKVRLTK  180
WYTPYQQKQR AKAQQESTKK KSQSIQRCLL YCIFSDGDPA SGRHQVGTIP AVQPLQRTAG  240
TRCDRRVPSC QDSFSLYVPL SPVTSQHVRG PPLADRQQEG CNSPYPRNNT PQQLTPSPPP  300
PPPLPLRRSC RARPSSRMFP ADVSALPLPG AARQGEGGVV PLLPPFFMGS IWQAGAGGSA  360
SASEEDEAAA AAAAAAAHDR ALAASRNHRE AEKRRRERIK SHLDRLRNID KASLLAKAVE  420
RVRDLKQRVA GVGEAAPAHL FPTEHDEIVV LASGAVFEAS VCCDDRSDLL PELIETLHAL  480
RLRTLRAEMA TLGGRVRNVL VLARDTTGRD IHGDGGVVTG DDGRSDLAAA GSINGNGGEF  540
LKEALRALVE RPGAGAGDRP KRRRVSDGNM QAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560564KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00127.1.g00260.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279664e-96KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-25bHLH family protein