PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00119.1.g00530.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 223aa    MW: 24822.2 Da    PI: 9.5929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00119.1.g00530.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-1552103155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ L++l+P+a   ++++ s a+i+  A++++k+L+
  Zpz_sc00119.1.g00530.1.am.mk  52 QRMTHIAVERNRRKQMNEHLSALQSLMPPA---YAQRGSQASIVGGAINFVKELE 103
                                   79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1750114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-1250107No hitNo description
PROSITE profilePS5088815.77751102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1252103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1452113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-957108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTTPPLPPAT RPNYSLITPK HTLPAVAPSP QSERRKRRRI MPVKNKEETE SQRMTHIAVE  60
RNRRKQMNEH LSALQSLMPP AYAQRGSQAS IVGGAINFVK ELEQPLQSLE EKKWARLRPA  120
DGNDGDAAAF ANFFNFRRAW VEALGRGRDR GNHGGEPRQP SDTVPATGRL TVLHLNMTSS  180
GNMVLYSFSL KVEDDCQLTC VDDIATAAHQ ILEKIEEQGC SLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438RKRRR
23539KRRRI
35263RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00119.1.g00530.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803750.11e-64transcription factor bHLH94-like
SwissprotQ9C7T43e-46BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK912e-46BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2S3H0E03e-63A0A2S3H0E0_9POAL; Uncharacterized protein
STRINGSb02g027210.14e-62(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4501033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.12e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]