PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00119.1.g00240.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 246aa    MW: 26181.5 Da    PI: 10.0773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00119.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-115886331
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH  3 rahnerErrRRdriNsafeeLrellPkas 31
                                  r+hne+Er+RR+riN  +++Lr+llP as
  Zpz_sc00119.1.g00240.1.am.mk 58 RNHNEAERKRRQRINAHLATLRTLLPAAS 86
                                  68************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.45E-852107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.96955106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-75887No hitNo description
PfamPF000103.1E-95886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-85885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001961109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-5149218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSAPGLAGYF TPRYEPASKR EARTVAGMVP SQSNEAEATL DGECSAPAPA TTRSGPSRNH  60
NEAERKRRQR INAHLATLRT LLPAASRVSP CAFGSAREVV RHVRELRGEA DAAAAGSAVA  120
VPGERDEVGV AEGHYCWYAG ERAATRHVRA WLCCADRPGL MSELSRAVRS VSARPVRAEI  180
ATVGGRTRSV LELNVGGQHA AADGGSTSSR QALQAAFRAV LLSREEGMLA ADCYKRQRIS  240
AHLAKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00119.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957057.13e-90transcription factor bHLH30
RefseqXP_012699568.13e-90transcription factor bHLH30
TrEMBLA0A1E5W6B92e-93A0A1E5W6B9_9POAL; Uncharacterized protein
STRINGSi033077m1e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-22bHLH family protein