PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00109.1.g00620.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 225aa    MW: 25037.7 Da    PI: 10.39
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00109.1.g00620.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.9e-071902111031
                                   HHHHHHHHHHHHHHHCTSCCC. CS
                           HLH  10 rrRRdriNsafeeLrellPkas 31 
                                   +rRR+riN+++  L++l+P++s
  Zpz_sc00109.1.g00620.1.am.mk 190 QRRRSRINEKMKALQTLIPNSS 211
                                   8******************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-5190217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-6190217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRKTASSRSL GGDTDGPADE TRRREQLKGR FLKSSALRCS FLGPTESRNK QTNDLEREEE  60
HKASAMEKPR KCRCLASGSG DHFSLANPVN LASTCELSCR GATAMDGQHQ LDLIMRHQSM  120
ANICDSEDAL GSSESEPARP ARPRGKRSRA AEVHNLSEKV VAWLLPLFVL DIFLAERRCS  180
LILMLVKLVQ RRRSRINEKM KALQTLIPNS SKVHHKASPP SLVHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00109.1.g00620.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370699e-55BT037069.1 Zea mays full-length cDNA clone ZM_BFb0153L05 mRNA, complete cds.
GenBankEU9577739e-55EU957773.1 Zea mays clone 1615677 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954276.12e-36transcription factor SPATULA isoform X1
RefseqXP_022682068.16e-37transcription factor SPATULA isoform X2
TrEMBLK3YU164e-35K3YU16_SETIT; Uncharacterized protein
STRINGSi017762m7e-36(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2802134