PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00097.1.g00580.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 480aa    MW: 51135 Da    PI: 4.3135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00097.1.g00580.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13215258755
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +ErrRR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Zpz_sc00097.1.g00580.1.sm.mk 215 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 258
                                   58*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-18206271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-14208262No hitNo description
PROSITE profilePS5088815.974208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-16214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10215258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16215269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVSNQPIWQT NSVTDQLPTG SYSSELGAGG PRTRLLVPVA GGLVELVASR YMAEEVQMAE  60
LVMAQCGVPE RAAAGKEGDA GALQAPQAWA EQPCFAWDDG AADPQAQRMY VVPPSLNLFD  120
AANPFLAVQQ ASSTVVDDAA AGGWQYAAAA AGSEPSSVAV PQEQLQVGRA GGGAESVSEG  180
SDLQGDPDLD DGDGDQSQVA GGKGGGKRQQ CKNLVAERRR RKKLNDRLYK LRSLVPNITK  240
MDRASILGDA IDYIVGLQNQ VKALQDELED PDAPADGVIP DVLLDHPPPA SLVGLENDES  300
PRTSQQQPLA GSKRSRTAEE EKGLDMEPQV EVRQVEANEF FLQVLCERKP GRFVQLMDAM  360
NAQGLEVTNV NVTSYKTLVL NVFRVMVRSL LASCFDATAV IRKDSEVAVQ ADRVRDSLLQ  420
VTRESYGGGV WSSSSAAPVG SSIDVKLDPG DVKLDGIDGQ ASVAAEDHHG DYNHLLQYLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216223ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00097.1.g00580.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343261e-138BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds.
GenBankBT0427911e-138BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
GenBankBT0630101e-138BT063010.2 Zea mays full-length cDNA clone ZM_BFc0017C04 mRNA, complete cds.
GenBankBT0631181e-138BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds.
GenBankBT0657171e-138BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds.
GenBankBT0677851e-138BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0688361e-138BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0880901e-138BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0882991e-138BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
GenBankEU9729611e-138EU972961.1 Zea mays clone 390787 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825508.10.0transcription factor TDR-like
RefseqXP_025825517.10.0transcription factor TDR-like
RefseqXP_025825524.10.0transcription factor TDR-like
RefseqXP_025825535.10.0transcription factor TDR-like
RefseqXP_025825544.10.0transcription factor TDR-like
RefseqXP_025825551.10.0transcription factor TDR-like
RefseqXP_025825560.10.0transcription factor TDR-like
SwissprotQ6YUS31e-130TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A1E5UQU60.0A0A1E5UQU6_9POAL; Transcription factor TDR
STRINGSi006199m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-51bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]