PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00060.1.g00580.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 85aa    MW: 9663.9 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00060.1.g00580.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-0911521454
                                  HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                           HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                                  d+iN+ +++L+ellP++s + ++ + s +  L++++ YIksL
  Zpz_sc00060.1.g00580.1.sm.mk 11 DEINDLISKLQELLPESSrRRNASRSSASKLLKETCSYIKSL 52
                                  68**************6647777889***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.972152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-71152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-91168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSGRRGRISD DEINDLISKL QELLPESSRR RNASRSSASK LLKETCSYIK SLHREVGDLS  60
DRLSELMSTM DNDSPQAEII RSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00060.1.g00580.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639079e-96BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645859e-96EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917019.14e-40transcription factor ILI5
RefseqXP_015613962.15e-40transcription factor ILI3-like
SwissprotA2XD157e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R477e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A1E5VT241e-45A0A1E5VT24_9POAL; Transcription factor ILI3
STRINGOGLUM10G09100.12e-39(Oryza glumipatula)
STRINGOMERI10G06270.12e-39(Oryza meridionalis)
STRINGORUFI10G09690.12e-39(Oryza rufipogon)
STRINGOS10T0403800-002e-39(Oryza sativa)
STRINGORGLA10G0079400.12e-39(Oryza glaberrima)
STRINGOBART10G09290.12e-39(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-26bHLH family protein