PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00056.1.g00180.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 407aa    MW: 44995.8 Da    PI: 6.0787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00056.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08216258754
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Zpz_sc00056.1.g00180.1.am.mk 216 KKEKQRRQRLGEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 258
                                   57*********************9.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.429209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-5215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6216258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-10218280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-7218258No hitNo description
Gene3DG3DSA:4.10.280.107.7E-8218271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGNGTDSNEL QQSEDVSESW PRGWQMREKD GKRGWEWGRF MSFTSWSEPL VFWSKTVRSE  60
QAGKEGVTFC ELLMGHDSLD LDAGQPQLTT SRVATIPTEL SFQLFHSLDA DAAVPPPTVD  120
YYFGGADHQS AVQYEPLVLA GSLHTTMLRD YYPMGAPYLR GTTAGTLVFG APDDESVAYM  180
DGTFQSSPPP LAKGGKKRSR ALSGGFHGGL VNGVEKKEKQ RRQRLGEKYT ALMLLIPNRT  240
KDDRATVISD AIEYIQELGR TVEELTLLVE KKRRRRELQG DVLDAAPAVV AAGTEPESSE  300
GEVVAPTPAV QRQPIRSTYI QRKSKDAFID VRIVEEEVNI KLTKRRHDGC LAAASRALDE  360
IRLDLVHLSG GKIGGCHIYM FNTKIHPGSS VFASAVASRL MEVVDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200GKKRSRA
2270275KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00056.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815629.11e-166transcription factor TIP2-like
SwissprotQ5JNS01e-142TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A1E5UWC61e-174A0A1E5UWC6_9POAL; Transcription factor TIP2
STRINGPavir.Eb01270.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.23e-30bHLH family protein