PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00055.1.g00440.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 279aa    MW: 29264.7 Da    PI: 6.2892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00055.1.g00440.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09167214455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Zpz_sc00055.1.g00440.1.sm.mkhc 167 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 214
                                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15161226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-10161218No hitNo description
Gene3DG3DSA:4.10.280.109.0E-16163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-6167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDCSDYMTSL LMGASAPGLD FGALDGGFLD TLCGGGGLSG PPGVAPQPGA GAESREGSSV  60
SDPSWARARD GGNARKRKAP AAIGAAEGKE ACLGKVGVAK GPDGSKRCRL SAGDSPVKPK  120
VEEATTSDGS VGDKGTKQGK GKSSKPAVEP PKDYVHVRAR RGQATDSHSL AERVRREKIS  180
QRMKFLQDLV PGCNKVVGKA LMLDEIINYV QSLQQQVEQR DFWEDGLQNA LHIGNEQSQE  240
VVGVSAPNFD GQLQDDDAKI VISKDDLFVY KECGTCGSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00055.1.g00440.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310511.12e-97transcription factor bHLH49-like
TrEMBLA0A1W0W5Y55e-96A0A1W0W5Y5_SORBI; Uncharacterized protein
STRINGSb02g029040.22e-97(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.14e-40bHLH family protein