PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00053.1.g00200.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 237aa    MW: 25271.8 Da    PI: 7.6077
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00053.1.g00200.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.81e-123862125
                       G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                                  kprlrWt +LHerFv+av+qLGG+e
  Zpz_sc00053.1.g00200.1.sm.mk 38 KPRLRWTADLHERFVDAVAQLGGPE 62
                                  79*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-113563IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-73863IPR006447Myb domain, plants
PfamPF143795.1E-20110155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFPPGLIHHR PDGPAPGDAP PRSGPGGGPS LVLTADPKPR LRWTADLHER FVDAVAQLGG  60
PESERLPLHP SNARSLAGAS IGLLVGLPRV DSCPARPIVA SLLLERGSQE VKEALRAQME  120
VQRRLHEQVE VQKRVQIRMD ALQKYIDGIL ENACKLVTEQ FASSSFSISD PADLPELSPG  180
GGGVMCGPND TMRSSVFNQL AVSSMDSHSP GGKPSPSGIE GPPLLLQKSP ELRRRSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00053.1.g00200.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9619256e-53EU961925.1 Zea mays clone 239069 myb family transcription factor-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956514.11e-106protein PHR1-LIKE 2 isoform X1
SwissprotQ8LAJ73e-31PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A368Q0491e-104A0A368Q049_SETIT; Uncharacterized protein
STRINGSi030441m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.18e-33G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]