PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00042.1.g00450.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 187aa    MW: 19542.4 Da    PI: 7.8826
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00042.1.g00450.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.2e-302105199
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l a+p ++r+++++sl+yeA+ r+ +Pv+
  Zpz_sc00042.1.g00450.1.sm.mkhc   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLGAVPLQHRPALFRSLLYEACGRTINPVS 80 
                                     6*********************9999888899*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                     Ga+g++++++++l+q++ae++l++e
  Zpz_sc00042.1.g00450.1.sm.mkhc  81 GAIGLMWTGNWDLCQAAAEAVLRGE 105
                                     *******************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8991107IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLGAVPLQHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGESLRAL SAIPAAFTDR  120
DMAGLYGNVG VAASSSPEHS SSTPSRKREN CGRFLAGTDD CQPPAGLLLQ PCELHLCLTP  180
ASLPAGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00042.1.g00450.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-124AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177395.15e-97LOB domain-containing protein 39-like
SwissprotQ9FN112e-54LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A3B6JFF01e-95A0A3B6JFF0_WHEAT; Uncharacterized protein
TrEMBLA0A453HER91e-95A0A453HER9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_9575221BB.32e-96(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-56LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]