PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00021.1.g00620.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 730aa    MW: 79302.6 Da    PI: 10.0726
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00021.1.g00620.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19108155455
                           AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e Aa+a++aa+++l+g
  Zpz_sc00021.1.g00620.1.am.mk 108 RGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEAAARAYDAAARRLRG 155
                                   9******.**********44.....55**************************9 PP

2B335.61.7e-116597281792
                                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                            B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                    lp  f++++  k  ++  +tl de  ++++  +     +++  l++GW++F+ +++L +gD vvF+l+++++f+ 
  Zpz_sc00021.1.g00620.1.am.mk 659 GLPVGFCRKYLPK--RDERITLVDEADEEFDTLYL--APKRG--LSAGWRGFAVDHELVDGDCVVFELVEQTKFKV 728
                                   69********433..4557***************4..44444..9**********************998777744 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.7E-29106169IPR001471AP2/ERF domain
PROSITE profilePS5103223.354106163IPR001471AP2/ERF domain
PfamPF008471.4E-12107155IPR001471AP2/ERF domain
PRINTSPR003671.7E-8107118IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-20107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-28108163IPR001471AP2/ERF domain
CDDcd000182.65E-14108165No hitNo description
PRINTSPR003671.7E-8129145IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-15605621IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-18606730No hitNo description
SMARTSM010199.1E-5642729IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109643730IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-14658729IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-15659729IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-9659728IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
LPLLVGATSH WWELRGTKKI GAALLAGTPG PNTWHVPPPD SPGLAAPSGR HPPHSILNPV  60
AAATTPTRAC RGTGTTSMAP PRSSTSLPSG SSSSSTGLEP KEQPLRLRGV RKRPWGRYAA  120
EIRDPVRKAR VWLGTFDTPE AAARAYDAAA RRLRGPGAAT NYPVADAVPS EGSSSSSSCQ  180
DLDSRPSVAV EATAPPSLDL SLGLPATMAA GHPCLFVDQT ETTVPDVPAL IQFLPLKSEE  240
EAGESVWSSS PGLGDAAPTV GVGLDLSLSW PAATAMFGCT GSPTELARGY RRGYCRSSPA  300
APLALRVSSS VKICIHSRRS PHPFLLSKVS AGAEFKFESV AVRLPPRCTP CMHLSGPAKP  360
QRDGQGRRFM NRVHKPKTPT PSFSLAVRPI QLLCYAFCSP SKPAHPRNRK RWDSERGRSM  420
ADAASYEEQR RRLIEANKRK LEELQLHHLS AAVRDAASGM LSPVGPASLY LPLFLLLQRS  480
FIYAAAVGLL SSSDLGLARQ AKKRKLRVPR HAAGEEAEPL RRSGRVASIP EKPNYRDVRA  540
CVPIRVFINR STCAQVVPDF ERRIRRSSGR GRRSDLDNRV YATEEERTYA ITKAEEVAQG  600
LGSGFPSFVK PMTQSHVTGG FWLVKSWRLL PITSCCQFPL SFTSVEVDIS FGGLMELQGL  660
PVGFCRKYLP KRDERITLVD EADEEFDTLY LAPKRGLSAG WRGFAVDHEL VDGDCVVFEL  720
VEQTKFKVTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171061631472Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00021.1.g00620.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701539e-64EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankEU9753889e-64EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankKJ7277069e-64KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein