PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00018.1.g00590.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 1051aa    MW: 111579 Da    PI: 9.7756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00018.1.g00590.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.3e-057727972555
                                   CTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  25 ellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +l+P++      K +Ka++L +A+eY+ksLq
  Zpz_sc00018.1.g00590.1.am.mk 772 QLIPHC-----NKTDKASMLDEAIEYLKSLQ 797
                                   688887.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.489747796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.009759802IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.90E-5772801No hitNo description
Gene3DG3DSA:4.10.280.101.1E-7772804IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-8772812IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1051 aa     Download sequence    Send to blast
MQPRERPLRH GLREGGDRGL LLLRERPPAT HRSSAGTRKR EVAATDLLPS RRKVVPLGDR  60
PRLGQRGRRP RRRRRHGRML YGRLTSGGGK LPERRVRCTT LRAIGLGAER TETWLAEDER  120
TPLVLPRRRG AVPIADGRMD HAGLGSRQNH ELNLAARSGL PKPRSDSSWP RSAVHQTPAK  180
VAREDATASR AMAGRPGSPT MASWCLGPMV GPLTLASVPP YSGSCDPRAA NKRDPERRLV  240
ALPGLACRLP VWGKGCATAT CAARPSSAFP QGDRRIEGKD VALIRRICFV ARPARISSCR  300
CLWRLERSLR PQAEQVATRR GRESGSIGTF MATSPTSAIH APSYNLVDAR RLPEMQVNPT  360
DARAAPRRVE IASVHAPPHL SDPDSGPLPL LPSLFLSPSL SRRLCLPESS SIQPTGRCRA  420
ALQLCLKATA KPSSFLLVLP CCCFCKAKDR FSSCPRTRSS CLEFTGANAS RAGILLRRED  480
DDLIELLWCN GHVVMQSQTN RKLPPPRPEK PGPLGSPPPP PPAAAVTPTA VQEDEAGLWF  540
SFSLADVLDK DIFSDFFSEA PPVAAPATAV EAGKPPCRDV PVPVPPREDG GTHGAVSDAP  600
RHLMPPPKST PHVSCSRQQT TNLGDDLSEL VPAGSGRKAA GTEAGASSST LSAIGSSICG  660
SNQVLVPLRA PATAACGGST LPSAVGSANA NASGRGHETT VASSSGRSSG CFGATTEPTS  720
TSNRSSKRKR LDTEDSESPS EDAESESTAA ERKPPPKLPT ARRSRAAEVH NQLIPHCNKT  780
DKASMLDEAI EYLKSLQLQV QMMWMGSGVT APPVMFPGVH QYLPRMGVGM GAAAAAAMPR  840
MPFMAPQLVN PVPLSPGYLG HMPAVGITEP YAHYLGTVNH LQPTLTQHFA QGVDYYPLGT  900
KAVQQNPALH VPGAGGSMTA AAPGVLPPES APNKGPGTTP SCSSLLVAVM LGPGLSPISH  960
NALLTIADSS TATAASCACR RAEEEAISSS FLLLCNVMCC DGWCIEWVAR GGQSANVAAT  1020
SMDELVRAVA IHACMLLLEQ GRVGVVSSER L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772RRPRRR
26774RRPRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00018.1.g00590.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605055e-60AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.12e-19phytochrome interacting factor 3-like 6