PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00017.1.g00910.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 329aa    MW: 36677.4 Da    PI: 7.6161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00017.1.g00910.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09119166455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Zpz_sc00017.1.g00910.1.am.mk 119 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 166
                                   8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17113182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-10113170No hitNo description
PROSITE profilePS5088815.656115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16115180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MESFSRLPQQ MEHGHTNASH SMPSYLFCHG ADSAIPEDAS METSSVVLDT SPQRTASVDK  60
KRKLSEDGAS LSSAHSKDSK EETKKRGGKR ERNRKEMDED EAPKGYIHVR ARRGQATDSH  120
SLAERVRRER ISERMRVLQA LVPGCDKVTG KALILDEIIN YVQSLQNQVE FLSMRIASLS  180
PVLYGFGMDS DAVIDHAQKI EGLLHQEAFA IPASVLTRAP PQAIMDTNTS NSPASHEVHG  240
DGCMSFYQVR LLFRSIYLMA IQDSVPEHCD NDHEADLPDF RTMAATWCKQ WVKSQSKNCS  300
IKWRRARLPA CINPTAVKSI AVESNPAGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00017.1.g00910.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855811e-106BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
GenBankEU9621211e-106EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.11e-131transcription factor bHLH137-like
TrEMBLA0A2S3H1M21e-130A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EUH41e-130A0A2T7EUH4_9POAL; Uncharacterized protein
STRINGPavir.J05063.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-38bHLH family protein