PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00017.1.g00510.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 298aa    MW: 31491.4 Da    PI: 6.5231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00017.1.g00510.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09168215455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Zpz_sc00017.1.g00510.1.sm.mkhc 168 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 215
                                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.48E-10162219No hitNo description
SuperFamilySSF474594.84E-17162233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17164232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDGDYVTSLL MGASAPGLDF GALDGGLLDT LCGGGGVGLF GPPVVAPPPG GADSREGSSV  60
SDPAWARSTR DGGNARKRKA PAAVGAGEDK EAACLGKVGE AKGPDSKRCR VGTGESPVKP  120
KLEETTGSDG SVADKGTKKG KGKSSKPAVE PPKDYVHVRA RRGQATDSHS LAERVRREKI  180
SQRMKFLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF LSMKLATVNP QLDFSNLPTL  240
LHKDMYQACG PSQTTQRDFW EDGLQSALHI GNEQSQEVGV SVPNFDGQLQ ADDAKIEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00017.1.g00510.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804696.11e-133transcription factor BHLH089-like
TrEMBLA0A3L6TFE21e-134A0A3L6TFE2_PANMI; Transcription factor bHLH49-like
STRINGPavir.Ba01626.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-52bHLH family protein