PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00016.1.g01380.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 565aa    MW: 61548.5 Da    PI: 9.8967
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00016.1.g01380.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-34207325189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++          a+++   
  Zpz_sc00016.1.g01380.1.am.mk 207 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 284
                                   689**************************************************************553331...2111211 PP

                           TCP  74 .eaesssssasnsssg............................k 89 
                                    e+++++ s+s                                 k
  Zpz_sc00016.1.g01380.1.am.mk 285 tEQGEQVTSTS----YgfgsnpggavtgvaggslvqhsagadgvK 325
                                   23333333333....134445555666666666665433333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.5E-32209320IPR005333Transcription factor, TCP
PROSITE profilePS5136931.678210268IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAVSSTAKAL LSSAVGRIFP FSRYGDSGHP SLSFAPQPRT GSEAEFAPES MHKWIPEPRY  60
PNRSRGVQVA SEREKISFAA TLSRAVIALF SFPFDSPLLP LPFRLWGVQV RSLKLEEDKN  120
QLSKGLDPWS NNPTATTSTL HYLLQEKERE QLQIYHQQGF SSYLQHHRRQ QQQSRGGSGG  180
DGISSGESTP VDALTAAFGS GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD  240
VQDRLGYDRP SKAVDWLIHN AKAAIDEIPD RPEATEAAKA AAEATEQGEQ VTSTSYGFGS  300
NPGGAVTGVA GGSLVQHSAG ADGVKSLFPS SSTASTTPTH DEQYRCSPPD LLSRTTTSSQ  360
PQELCLTLQS NQHPIFSHVS SNHHGIISGA GVPGWPEHNQ RMPSWHASEN NMGDGHGGGN  420
GETYMFSMQP RQGLDQIQWQ LDFCPYLARP PSRNTTAVGN GWAAPPLNNF ARAEPPCSMR  480
RGPAALPPDY SPHHYRLALS LRRRIKHRSR VDIKFQNSDR ETRGTPRGRA MHTYVGSKQN  540
SPLCRAPGAG ADGGEMHAAG STARP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-19215269155Putative transcription factor PCF6
5zkt_B5e-19215269155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00016.1.g01380.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721191e-122EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.11e-173transcription factor PCF7
SwissprotQ8LT051e-137PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB941e-172A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-32TCP family protein