PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00015.1.g00540.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 294aa    MW: 31553.2 Da    PI: 10.6702
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00015.1.g00540.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.9e-2989145254
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYR 54 
                                   pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ    +YR
  Zpz_sc00015.1.g00540.1.sm.mk  89 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQarapMYR 145
                                   9*************************************************5555566 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.3E-1485140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-2686146IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-2189138IPR006447Myb domain, plants
PfamPF002493.1E-690138IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNSTTVTGAT PDLSLHISPP SPADGGGETP EPSSTLRLGL DTAAKTVVDA AQRGLLVQQR  60
LHQPSQTAHG FKKSSGAGAR GRKRCSRAPR MRWTTALHAH FVQAVELLGG HERATPKSVL  120
ELMNVKDLTL AHVKSHLQAR APMYRTVKST DRSCVAGHGQ AREMGFLMGR GDAPEMDGLF  180
DGFNCNVVNT TAMFSSNSST SRLLGPVLKE EAYMHIRVKK LECLMVPPSS LSTRPGRQWS  240
TSIIRIRTIS IVPLAPVAVL GPSSVAPVVM PVESQVRQPE RDKGDSSIGL DRPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1590148458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00015.1.g00540.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183178.15e-68probable transcription factor KAN4
SwissprotQ9FJV53e-34KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A0A9GQA66e-80A0A0A9GQA6_ARUDO; Uncharacterized protein
STRINGPavir.J09156.1.p9e-69(Panicum virgatum)
STRINGTraes_5DS_39E5EF501.27e-69(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.27e-38G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]