PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00015.1.g00420.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 307aa    MW: 33002.5 Da    PI: 4.9573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00015.1.g00420.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-112352751055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Zpz_sc00015.1.g00420.1.am.mk 235 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 275
                                   9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-14225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.021225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12230285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-12234279No hitNo description
PfamPF000103.9E-8235275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEIAEVGWTT EFDFSVHGEE ESEEMMAQLL GNSFPSSHGE GGHQELPWCY QAPGAYCDGN  60
GGSLVVGPAA YEGCYLSNSN AALGISSSDD LGGLVQDHGA ADFLNVFPNH SFSVYENGNG  120
SLNQVDLDDP GMSGVDSACA ANKRKHLVAD ELDHQTRARK RARKCEAAKG PKKAGQSGDE  180
NADATLITSG SPTSCCTSDD SIDSNASRDC ADARPRTKAR AGRGAATEPQ SIYARKRRER  240
INERLKILQN LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDTWMFA PIAYNGMNVG  300
AHLNIAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142163KRKHLVADELDHQTRARKRARK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00015.1.g00420.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616598e-50AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806266.11e-123transcription factor bHLH139-like isoform X1
RefseqXP_025806267.11e-123transcription factor bHLH139-like isoform X1
SwissprotQ84WK05e-47BH085_ARATH; Transcription factor bHLH85
TrEMBLK3Z8E31e-124K3Z8E3_SETIT; Uncharacterized protein
STRINGSi022813m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-43root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]