PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00013.1.g00320.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 235aa    MW: 24708.7 Da    PI: 8.2297
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00013.1.g00320.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.61.1e-261666457
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                   +Y+eC++NhAa+lG++a DGC+E++p+   ++++aa+ CaACgCHRnFHR+  
  Zpz_sc00013.1.g00320.1.am.mk 16 EVYRECMRNHAAKLGTYASDGCCEYTPD---DAHPAAMLCAACGCHRNFHRKAF 66
                                  68*************************8...678*****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.8E-221765IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-201864IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-201864IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.9531865IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.91E-16105179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-27106179IPR009057Homeodomain-like
TIGRFAMsTIGR015659.0E-28118179IPR006455Homeodomain, ZF-HD class
CDDcd000860.00611118178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEQQQPQQQQ QERPREVYRE CMRNHAAKLG TYASDGCCEY TPDDAHPAAM LCAACGCHRN  60
FHRKAFLDAV SGATGAASPH APPMLPSPGP APAGYGMHMA LAASAGMGGG AHGSASRRRT  120
RTKFTEEQKE RMLQFAERLG WRMPKREPGR VPGDDEVARF CREIGVTRQV FKVWMHNHKV  180
GGGSGGGASA AGVGGAAQTS SSTTRGGGGA AGGGGSMSPA MGEDDEEVRG SEMCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-191171861780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00013.1.g00320.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3699062e-74AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466561.14e-99zinc-finger homeodomain protein 11
RefseqXP_020168474.14e-99zinc-finger homeodomain protein 11-like
SwissprotA2XLF44e-92ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV54e-92ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6U0851e-100A0A3B6U085_WHEAT; Uncharacterized protein
STRINGTraes_4AL_5659286D11.11e-100(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-33homeobox protein 22