PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00011.1.g00260.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 592aa    MW: 63614.8 Da    PI: 9.1737
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00011.1.g00260.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.7e-06181203123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cgk F r  nL+ H r H
  Zpz_sc00011.1.g00260.1.am.mk 181 FVCEICGKGFQRDQNLQLHRRGH 203
                                   89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-7180203No hitNo description
SMARTSM003550.012181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614181203IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5181203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355130224254IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.39E-7254279No hitNo description
SMARTSM00355160259279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVLALVVPFS LSPSSPSLLR RYLLTLFLSP RRLSLSLFLS ASAIKAGRFL LSLSPLRAAA  60
ARCKLSLSPG AWCLLAWCGE AALSSASQFS HTPVSSHRSS FFMFHQQQLL QEQGEAADQD  120
SSMSNLTSSA SGPNNPPPPP SPAPAASAGN NKRKRSLPGN PDPDAEVVAL SPATLVATNR  180
FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAAR KKVYVCPEAS CVHHDPARAL  240
GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV HSDWKAHSKI CGTREYKCDC GTIFSRRDSF  300
ITHRAFCDAL TEESARAIGL NAAMHGAAPV HQALLFSSTS HSQQVMQQQQ HQELAAFQDQ  360
QPQQEVMQPQ PPPPPPQQVQ AASQQQQHCN YAMKTEMPSP WPTMPYDHHA HPLLQPLCAQ  420
SSATSAPPPP QQQQVPRASA HLSATALLQK AAQMGATICT AGGGGAHYTQ MAGAATSAPG  480
SASFGLGLPR LNAQQDAAMG GLARSTSHGR SGEDGGGGGG ANEGMTRDFL GLRAFSHRDI  540
LNLAGLDSCI GAVNANTSMG CYEPQQHAQA QPQQQQQQQS NNEQWHGMGS HG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ9LRW71e-113IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLK3XHB60.0K3XHB6_SETIT; Uncharacterized protein
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-92C2H2-like zinc finger protein