PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00007.1.g00020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 317aa    MW: 33490.5 Da    PI: 9.6652
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00007.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.25.6e-3832128196
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i
  Zpz_sc00007.1.g00020.1.am.mk  32 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 112
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqqleqlkaelal 96 
                                   ++lqqq + +++e+a+
  Zpz_sc00007.1.g00020.1.am.mk 113 FALQQQQRAVRKEAAK 128
                                   *********9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.84731133IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3732127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSSGGCTSTP PGGGGGGCPS GSGGPGGGGG GPCGACKFLR RKCVSGCIFA PYFDSEQGAA  60
HFAAVHKVFG ASNVSKLLLQ IPAHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQQR  120
AVRKEAAKPG TLLRAGTRRI LRRRIVIPAV RCLPPPVAYY YAVVHLGLRI VLGWWCQRQS  180
LVVNLQAELT YLQAHLATLE LPSPPPLPAP PQMPVPAPFN IADLPSATNV PTTVDLSALF  240
DTPPQAHQWA SVQQQHHHQL RQPTMTSYGA SVRGGHGMAE SSSAGGGGDL QALARELLDR  300
QRSGVKLESP PPPPPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-35281257103LOB family transfactor Ramosa2.1
5ly0_B4e-35281257103LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00007.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614311e-132BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132370.13e-74uncharacterized protein LOC100193815
TrEMBLA0A0E0GJP45e-87A0A0E0GJP4_ORYNI; Uncharacterized protein
STRINGONIVA03G11070.18e-88(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4217433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-50LOB domain-containing protein 18