PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00002.1.g00830.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 261aa    MW: 28559 Da    PI: 5.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00002.1.g00830.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.95e-053885152
                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                                    r++ + erE+  Rd++N+ f eL ++l ++     + + Ka iL  +++ ++
  Zpz_sc00002.1.g00830.1.sm.mkhc 38 RKVHKAEREKLKRDQLNDLFVELGDMLDED----RQNNGKACILADTTRILR 85
                                    677889*********************997....455666667766666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1134107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-934107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.6333787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVPSDRGSVA TAVSTAAATD KLPLGPASSK KIQKKAPRKV HKAEREKLKR DQLNDLFVEL  60
GDMLDEDRQN NGKACILADT TRILRDLLSQ VESLRKENST LQSESHYVTM ERDEMRDETS  120
ALCKEILELQ NELTRLSSNS GWGHGTAESD SASAVFPSQQ PVQPPSVAST LIPLQQPLPS  180
TTVIEHPYAA APRELKLFPK AGYEPAEGQE ATNRVTRPQA RYPIQAASWP VSLFSGLPRM  240
EDEQCSSTTT GSSKEASTGR D
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00002.1.g00830.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148562.11e-117amelogenin precursor like protein
RefseqXP_008676027.11e-117amelogenin precursor like protein isoform X1
RefseqXP_008676033.11e-117amelogenin precursor like protein isoform X1
RefseqXP_008676036.11e-117amelogenin precursor like protein isoform X1
SwissprotQ69V101e-79BH062_ORYSJ; Transcription factor BHLH062
TrEMBLB8A2P81e-116B8A2P8_MAIZE; BHLH transcription factor
STRINGGRMZM2G350312_P021e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-33bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]