PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc10454.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 125aa    MW: 13047.1 Da    PI: 4.1497
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc10454.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.33.2e-1670125254
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksql 54 
                                   lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++ksql
  Zmw_sc10454.1.g00010.1.am.mk  70 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQL 125
                                   79*************************9977778*********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-1271125IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MVDDPSAAAG GGAMVSSSFP DADAYGNGDS EDIDFPAGPN SHASFSAAPA TTAATSAGAG  60
GPGSGERRAL FQRLWTDEDE IVILRAFAEF TAQRGTAFAS HQYDTTPFYE DMRGRLQTGF  120
TKSQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.13e-51probable transcription factor At3g04930
TrEMBLA0A368SQE64e-51A0A368SQE6_SETIT; Uncharacterized protein
STRINGPavir.Ib01769.1.p3e-52(Panicum virgatum)
STRINGGRMZM2G026417_P011e-50(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123