PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08061.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 287aa    MW: 30795.9 Da    PI: 8.1595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08061.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.81.1e-304107199
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pvy
  Zmw_sc08061.1.g00010.1.sm.mkhc   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPDNVRPAIFRSLIYEACGRMLNPVY 82 
                                     6*************************99*************************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                     G+vg+++++++ql+q+++e +l+++
  Zmw_sc08061.1.g00010.1.sm.mkhc  83 GSVGLLWSGNWQLCQAAVENVLRGR 107
                                     *****************99987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7573109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPDN  60
VRPAIFRSLI YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGRPIA PPPPAATAVP  120
PLKTCDIRHV VRRGDHGGVA ANGVADSSRG QFKRRGAQRS ARTDTAIELD FSWPSSATLV  180
NVEHALPLNW APGNKPGQEY SVSHDSAPET GSSKSVDTVE VSHVSQSEPE APRGIDGREV  240
GLDLALGLLP AAHKIEPLQF DNDQHDQRGE TVKIGVAFMV SICGNIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818644.11e-132LOB domain-containing protein 42-like
SwissprotQ9M8861e-72LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3L6R3711e-134A0A3L6R371_PANMI; LOB domain-containing protein 42
STRINGPavir.J11724.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127