PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07906.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 301aa    MW: 32887 Da    PI: 6.8148
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07906.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.31.5e-30197597
                        DUF573  5 rlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfske 83
                                  rlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++ksqlveK+rrLK+K++++v++ +  g ++sf+++
  Zmw_sc07906.1.g00030.1.sm.mk  1 RLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPNFSFRSP 83
                                  89**********************9977778***************************************88899******** PP

                        DUF573 84 hdqkifelskkiWg 97
                                  h+q ife+++ iW+
  Zmw_sc07906.1.g00030.1.sm.mk 84 HEQAIFEIARTIWR 97
                                  *************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-28196IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
RLWTDEDEIV ILRAFAEFTA QRGTAFASHQ YDTTPFYEDM RGRLQTGFTK SQLVEKLRRL  60
KRKYRNCVDR LRVAGPNFSF RSPHEQAIFE IARTIWRPAS DKHGRDSDDE GNDDGLAIDA  120
AAAARVNGES AKSPTSRPRR GRRRRAGDFP AGDAAEALPQ APMPAMTTED ALPSFPQPTA  180
MDGTGTVTME QPAAAGLPAM LSAAATVATT TGTAENPILA SLFKEMFRSM LNISSSSATP  240
GLEPPPAIPG LPMDGEKWRQ QRILELEVYL RRIALLQDQA QAALEELRSA PPQYGAGGTN  300
T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-130probable transcription factor At3g04930
TrEMBLA0A2T7CC961e-128A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R31e-128A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGSb01g034370.11e-126(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123