PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07616.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 422aa    MW: 45864.9 Da    PI: 10.0174
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07616.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1103.4e-3478189189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++          a+++   
  Zmw_sc07616.1.g00010.1.am.mk  78 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 155
                                   689**************************************************************543221...2111111 PP

                           TCP  74 .eaesssssasnsssg.........................k 89 
                                    e+++++        +                         +
  Zmw_sc07616.1.g00010.1.am.mk 156 tEQGEQV--------TltsygfgsnpggavtgvaggslvqhS 189
                                   1222222........122233444445555555555555541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3180191IPR005333Transcription factor, TCP
PROSITE profilePS5136931.67881139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST  60
PVDALTTAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR  120
PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTLTSYGFG SNPGGAVTGV  180
AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ  240
SNQHQIFSHV SSNHHGIITG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGDSYMFSMQ  300
PRQGLDQSQI FSQGEPIQSS GGWTSARTWL DPLAAIQQPS AMAGQHHPST TLPVPSRRAV  360
CGAALRRCRR TIRPIIIVPG RVRTEARRMQ QAPPRVPDRS PSVPFPSRVT SPYRARWPVW  420
LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1986140155Putative transcription factor PCF6
5zkt_B7e-1986140155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.10.0transcription factor PCF7
SwissprotQ8LT051e-140PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB940.0A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330