PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07415.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 99aa    MW: 11254.8 Da    PI: 5.1679
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07415.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.32.4e-26698187
                             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75
                                    +ppG+rF Pt+eel+++yL++k++g + ++e+vi+ +++y+v+Pw+L++        ++e + w+fF++r++ +a+g r++
  Zmw_sc07415.1.g00010.1.sm.mkhc  6 VPPGYRFYPTEEELICFYLRNKLDGLRGDIERVIPVFEVYTVDPWQLKEiherlcGGAGEGEPWFFFCPRQEGEARGGRPS 86
                                    69****************************99***************8545655422236779****************** PP

                             NAM 76 ratksgyWkatg 87
                                    r+t +gyWka g
  Zmw_sc07415.1.g00010.1.sm.mkhc 87 RVTPTGYWKAAG 98
                                    **********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-29398IPR003441NAC domain
PROSITE profilePS5100530.507699IPR003441NAC domain
PfamPF023652.0E-15796IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MAANGVPPGY RFYPTEEELI CFYLRNKLDG LRGDIERVIP VFEVYTVDPW QLKEIHERLC  60
GGAGEGEPWF FFCPRQEGEA RGGRPSRVTP TGYWKAAGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-1659916103NO APICAL MERISTEM PROTEIN
1ut4_B2e-1659916103NO APICAL MERISTEM PROTEIN
1ut7_A2e-1659916103NO APICAL MERISTEM PROTEIN
1ut7_B2e-1659916103NO APICAL MERISTEM PROTEIN
3swm_A2e-1659919106NAC domain-containing protein 19
3swm_B2e-1659919106NAC domain-containing protein 19
3swm_C2e-1659919106NAC domain-containing protein 19
3swm_D2e-1659919106NAC domain-containing protein 19
3swp_A2e-1659919106NAC domain-containing protein 19
3swp_B2e-1659919106NAC domain-containing protein 19
3swp_C2e-1659919106NAC domain-containing protein 19
3swp_D2e-1659919106NAC domain-containing protein 19
4dul_A2e-1659916103NAC domain-containing protein 19
4dul_B2e-1659916103NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818071.12e-55NAC domain-containing protein 90-like
SwissprotQ9FMR36e-31NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1E5URX23e-55A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRINGPavir.J02276.1.p6e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]