PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07248.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 327aa    MW: 35549 Da    PI: 6.1731
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07248.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.11.3e-47101571128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.............vikevdiykvePwdLpkkvkaeek.ewyfFskrdkk 67 
                                   lppGfrFhP+deelv++yL++kv++++ +  +              + evd++ +ePwdLp+++k +++ ewyfFs+rd+k
  Zmw_sc07248.1.g00040.1.sm.mk  10 LPPGFRFHPSDEELVCYYLRPKVAATSSSSLDqliavsispatsmLLVEVDLHVCEPWDLPEAAKLGDRqEWYFFSRRDQK 90 
                                   79**********************99944444466666777777569**************655555444*********** PP

                           NAM  68 yatgkrknratksgyWkatgkdkevlsk....kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                                   yatg r+nrat +gyWk tgkdk v+++    +       vg++ktLvfy grap+g+k+dWvmhe+rl
  Zmw_sc07248.1.g00040.1.sm.mk  91 YATGPRTNRATPHGYWKVTGKDKVVHDRdehgN--GtmmvVGTRKTLVFYLGRAPNGRKSDWVMHEFRL 157
                                   **************************9865541..15566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-548188IPR003441NAC domain
PROSITE profilePS5100554.43510188IPR003441NAC domain
PfamPF023651.9E-2711157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRLRDIESSL PPGFRFHPSD EELVCYYLRP KVAATSSSSL DQLIAVSISP ATSMLLVEVD  60
LHVCEPWDLP EAAKLGDRQE WYFFSRRDQK YATGPRTNRA TPHGYWKVTG KDKVVHDRDE  120
HGNGTMMVVG TRKTLVFYLG RAPNGRKSDW VMHEFRLGAA SCSSTSAASA MTPPQMEQDW  180
VLCRVFHKGK GEADNGGSSN VDMIASSSTG SSRLPALCSP PQPAHNLDGG RLFPTSVGSY  240
SSSPTIIIIS SGQQLVMDSD DHGVVTGQYL DAPTPAPAMI QQHAAAGDAV VAGSSAQLMD  300
MQGYGENVMR EMETMMSLQP GANNYFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4221885168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO655081e-54NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A0D9VNG46e-68A0A0D9VNG4_9ORYZ; Uncharacterized protein
STRINGLPERR03G00700.11e-68(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2552745
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]