PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07050.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 208aa    MW: 21738.4 Da    PI: 10.5718
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07050.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.3e-3554162989
                           TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasn 84 
                                   +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++     +++ssss  ++
  Zmw_sc07050.1.g00030.1.sm.mk  54 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSSHYQQ 134
                                   89*******************************************************999994443222211111111111 PP

                           TCP  85 sssg..........................k 89 
                                      +                          +
  Zmw_sc07050.1.g00030.1.sm.mk 135 ---SvlgkrpreegdatvaaasafwaalpsA 162
                                   ...1334445555555555555555554442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-3152138IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00953107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MPTRDVSTAA AAMFHVYQPA QIPSTAAPAT AATDGTVAVP TSTQGKKKSA QGGKDRHSKV  60
NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGS GTTPAVFVSS  120
SAPSTSSSSS HYQQSVLGKR PREEGDATVA AASAFWAALP SAAPRTEAWG FSPLEAQAAT  180
YVPMAQAHHL NLLAALSGAA RRAEEETR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452500.11e-84transcription factor TCP7
SwissprotQ9FMX27e-40TCP7_ARATH; Transcription factor TCP7
TrEMBLC5XY733e-83C5XY73_SORBI; Uncharacterized protein
STRINGSb04g026970.15e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100