PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06843.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 439aa    MW: 46527.5 Da    PI: 7.3816
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06843.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.3e-29130233199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C ++C ++p++     p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +P+yG+
  Zmw_sc06843.1.g00020.1.am.mk 130 SCNGCRVLRKGCGDSCSIRPCLqwiksPDAQSNATVFLAKFYGRAGLLSLVNAAPQHLRPAVFRSLLYEACGRIVNPIYGS 210
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelallke 99 
                                   vg++++++++++q+++e++l ++
  Zmw_sc06843.1.g00020.1.am.mk 211 VGLLWSGNWNMCQAAVEAVLKGA 233
                                   *****************998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.369129235IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-23130228IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKTSNRPPLV FARAFLVSWG GNRPGSKTVG GNVGLGSGFT GRAAILFDVA SLVTVGVRQN  60
IGRGSNAAFP VFAKPLAVCL LSLSLSSQLG TCIKVLSPDF PLPHHCSSPL LLPSLRISLL  120
GVGEENMRLS CNGCRVLRKG CGDSCSIRPC LQWIKSPDAQ SNATVFLAKF YGRAGLLSLV  180
NAAPQHLRPA VFRSLLYEAC GRIVNPIYGS VGLLWSGNWN MCQAAVEAVL KGAPIVKISS  240
DEAAADTPSP AHLHKAAYDI RHVAASSSSD KPGRLKKRTS ASSAAAAAAA ATTTTACSNK  300
KSKKAAPDDD HQQQEVSAAS DHHHLHVVEP MDSDDAEAAG SHVSQAEQST HSEREAEQSI  360
HNEREAEQSI HNERESEQST HDEQQVEEKP QEQMGLDLTL GFVPIPAQCV PRPAPDAGDA  420
GCSITGTGWT AHDPAFRFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568012.13e-83LOB domain-containing protein 41
TrEMBLF2DDE63e-85F2DDE6_HORVV; Predicted protein
STRINGMLOC_58304.15e-86(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127