PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06620.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 174aa    MW: 18404.8 Da    PI: 5.9019
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06620.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.77.4e-2819414100
                        DUF260  14 kdCvlapyf....paeqp......kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                   ++Cv+ap+f        +      ++fa+vhk+FGasnv k+l+++p   r+da+s+++yeA+ar+ dPvyG+vg+il+lq
  Zmw_sc06620.1.g00050.1.am.mk   1 PGCVFAPHFggtrE---HgggagaAQFAAVHKVFGASNVAKMLSRVPAALRRDAASTVCYEAQARVADPVYGCVGTILALQ 78 
                                   57*******66541...13444559******************************************************** PP

                        DUF260  85 qqleqlkaelallkee 100
                                   +q++ ++ el+++++e
  Zmw_sc06620.1.g00050.1.am.mk  79 HQVALVQGELSSVQTE 94 
                                   ***********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.267195IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-30192IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
PGCVFAPHFG GTREHGGGAG AAQFAAVHKV FGASNVAKML SRVPAALRRD AASTVCYEAQ  60
ARVADPVYGC VGTILALQHQ VALVQGELSS VQTELLNRRL ALATVHPSLP SASPTSQMLN  120
CGAVPQTVDF IDIDHSLRGL PPPLVPMQQP QQEEEKDEGS PIVDVSWENR NSCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-2719724113LOB family transfactor Ramosa2.1
5ly0_B7e-2719724113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970122.12e-83LOB domain-containing protein 4
TrEMBLK3XQV35e-82K3XQV3_SETIT; Uncharacterized protein
STRINGSi004290m8e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526