PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06447.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 207aa    MW: 23315.6 Da    PI: 9.8272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06447.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.3e-52361642128
                             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 
                                      pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t 
  Zmw_sc06447.1.g00040.1.sm.mkhc  36 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTG 113
                                     69***************************.89***************556667899*********************** PP

                             NAM  80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     sg+Wkatg d++++s+  +g+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Zmw_sc06447.1.g00040.1.sm.mkhc 114 SGFWKATGIDRPIYSAtsSGKSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164
                                     **************99888899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5535171IPR003441NAC domain
PROSITE profilePS5100551.86135188IPR003441NAC domain
PfamPF023651.1E-2537164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVAKEFAREA VSLDKVKSDG EALMAAGDGE EDDVVLPGFR FHPTDEELVS FYLRRKVARK  60
PLSVEIIKEM DIYKHDPWDL PKASTAGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSAT SSGKSIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPMAAAA NSASSSMQEA  180
VSSMLSVSTS SQRVDRQFAQ WHHKEMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49281648140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795725.11e-120transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-75NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3L6TSA41e-122A0A3L6TSA4_PANMI; Transcription factor JUNGBRUNNEN 1
STRINGSi036447m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]