PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06386.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 316aa    MW: 33307.9 Da    PI: 10.4074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06386.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20121172156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++ a+++++g+
  Zmw_sc06386.1.g00030.1.am.mk 121 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTFDTAEEAARAYDVAAREYRGA 172
                                   68********.**********83...36**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-29121179No hitNo description
PfamPF008473.5E-14121171IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23122180IPR016177DNA-binding domain
SMARTSM003803.8E-37122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-32122179IPR001471AP2/ERF domain
PROSITE profilePS5103224.474122179IPR001471AP2/ERF domain
PRINTSPR003672.8E-11123134IPR001471AP2/ERF domain
PRINTSPR003672.8E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
METAPDAAQF AAPQGGGAEK ARRRILMPPR KRRGAAARTV KALPDCAALY SLLPLHHHHP  60
LALAVASLFN PLLPRAISAT HTHAPFAHER KNTAMVPRTS EKTTQPASGL ALGVGCGAGG  120
PHYRGVRKRP WGRFAAEIRD PAKKSRVWLG TFDTAEEAAR AYDVAAREYR GAKAKTNFPF  180
TSTTSPTPPV AVAAMGVTGG GGSRSSNSST VESFGGDVRA PMQAMPLPPS LELDLFSRGA  240
GAVRFPFSSY PVSQPYFFYG QAAAAHMLKL APTVTVAAVA QSDSDSSSVV DLAPSPPAQR  300
TVTFDLDLNC PPPMEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22118184168ATERF1
3gcc_A2e-22118184168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.19e-75uncharacterized LOC100280582
SwissprotQ404771e-33ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A0A9U7H86e-92A0A0A9U7H8_ARUDO; Uncharacterized protein
STRINGGRMZM2G174347_P013e-74(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]