PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06380.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 182aa    MW: 20935.7 Da    PI: 10.3731
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06380.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.8e-113188562
                                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                                    kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +  l ++
  Zmw_sc06380.1.g00030.1.es.mkhc 31 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 88
                                    899*******************************************999887766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-182791IPR004827Basic-leucine zipper domain
PfamPF077167.0E-102880IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8292992IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.11E-123182No hitNo description
Gene3DG3DSA:1.20.5.1703.6E-123188No hitNo description
CDDcd147032.18E-173283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEFANGEFTE AEKKKIMANE RLAEIALTDP KRVKRILANR QSAARSKERK MRYIQELEHK  60
VQVLQTEATT LSAQLTMLQR DSTGLATQNN ELKIRLQAME QQAQLRDALN EALTAEVHRL  120
KVATGEITTD GNRMPKSLQQ QMNSQMLQLQ QLQIQQQQQQ SNQAQQSQQQ PRQQQQQPEK  180
SA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822599.15e-88transcription factor RF2a-like
SwissprotQ6S4P42e-53RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A0A9MTU53e-90A0A0A9MTU5_ARUDO; Uncharacterized protein
TrEMBLA0A1E5W1H43e-88A0A1E5W1H4_9POAL; Transcription factor RF2b
STRINGPavir.Fb02374.1.p1e-87(Panicum virgatum)
STRINGSb07g025270.14e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]