PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06343.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 428aa    MW: 46475.4 Da    PI: 6.059
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06343.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.74.1e-155354878
                                    SEEETTT--SS--S-STTTT-------S--- CS
                             SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                    rfh l+efDe+krsCrrrLa+hn+rrrk+q+
  Zmw_sc06343.1.g00050.1.es.mkhc  5 RFHLLEEFDEGKRSCRRRLAGHNRRRRKTQP 35
                                    9***************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.563133IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.8E-4520IPR004333Transcription factor, SBP-box
PfamPF031108.6E-8532IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.69E-12537IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MILYRFHLLE EFDEGKRSCR RRLAGHNRRR RKTQPDISFG GAASIEDKVS NYLLLSLLGI  60
CANLISGGTE NSNGQELLSN LLKNLGSVAK SLELKELSKL LEACQSLQNG SNAGTSGTAN  120
ALANNSAAEA AGPSNSNLLF MNGSQCGQAS SSAIPVQQKA TMVANPEPRA CKIKDFDLND  180
TCDYIEGFQN GQEGSPTPAF KAADSPNCPS WMHQNSTQIP PQTSGNSDST STQSLSSSNG  240
DAQCRTDKIV FKLFEKVPSD LPPVLRSQIL GWLSSSPTDI ESYIRPGCII LTVYVRLVES  300
AWRALLNSSS DNFWASGLVF VMVRHQLAFM YNGQIMLDKR LAPSSFHYCK ILSVRPVAVP  360
YSAAVNFRIE GFNLVSASSR LICSFEGCCI FQEDTAAITD DAELDDRETE CLSFCCPAPG  420
SRGRGFIE
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793312.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A0A9REY00.0A0A0A9REY0_ARUDO; Uncharacterized protein
STRINGPavir.J01500.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]