PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06246.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 380aa    MW: 40795.8 Da    PI: 9.5977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06246.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20209258255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Zmw_sc06246.1.g00040.1.am.mk 209 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 258
                                   59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.83E-32208266No hitNo description
Gene3DG3DSA:3.30.730.101.7E-32209267IPR001471AP2/ERF domain
PROSITE profilePS5103223.117209266IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22209266IPR016177DNA-binding domain
SMARTSM003802.2E-37209272IPR001471AP2/ERF domain
PRINTSPR003677.0E-11210221IPR001471AP2/ERF domain
PfamPF008472.2E-13210258IPR001471AP2/ERF domain
PRINTSPR003677.0E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLAWLRVHGP GLALLYKALA GRPLLPQRDA STHPRPPTTK NTTKPPATSR STPRTHQIPS  60
ASDQELMKAL EPFITSVSSS SSSSPYNYYS SPSSSITQDS FMSTPSYTSL ATPPLPTTDA  120
TSSSSFSQLP PLYSSPYAGQ ATPSMTGPMG LTHLSPAQIQ QIQAQFLLQQ QQQRGLHAAF  180
LGPRVQPMKQ SGSPPRGALA AAGAAQSKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD  240
TAEDAALAYD KAAFRLRGDM ARLNFPSLRR GGAHLAGPLH ASIDAKLTSI CQSLAGASSS  300
KNGSPASDSA ASSPESPKCS ASTEEEEESV SAGSPPSPTL APPVPEMAKL DFTEAPWDET  360
EAFHLRKYPS WEIDWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21205266163ATERF1
3gcc_A1e-21205266163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807978.11e-145ethylene-responsive transcription factor ERF060-like
SwissprotQ8H1E44e-66RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A3L6RQH81e-149A0A3L6RQH8_PANMI; Ethylene-responsive transcription factor RAP2-4-like
STRINGGRMZM2G029323_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]