PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06169.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 320aa    MW: 35394.6 Da    PI: 6.8565
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06169.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.81.6e-33156246273
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 
                                   ++++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt++WLl q+kpai+ l +t                 
  Zmw_sc06169.1.g00020.1.am.mk 156 PVRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDRLGFDKASKTVNWLLIQSKPAIDSLCDTsmpgapvfgptvvkgkk 236
                                   6899************************************************************44444444444444444 PP

                           TCP  66 ..ssssasec 73 
                                     +sss+  c
  Zmw_sc06169.1.g00020.1.am.mk 237 geGSSSSPGC 246
                                   4323333233 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.499158216IPR017887Transcription factor TCP subgroup
PfamPF036342.7E-31158221IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MARSAYASST ASYPRRTTSW TWHGQAITEV EVNELEASSS SSMALAKADR NPPHRHHHHH  60
QCVYQQEQPL IPNPTAAFLM PATASWDEYG GQIFPAADMY NQQETLEAVL RQAVTAPRQQ  120
DHHPAVEREL ESSRDGAAPA VDDGVAPAAV VPQRRPVRTD RHSKIRTAQG VRDRRMRLSV  180
GVARDFFALQ DRLGFDKASK TVNWLLIQSK PAIDSLCDTS MPGAPVFGPT VVKGKKGEGS  240
SSSPGCFKDT RERVRSRGAL DPAAAFMEDR GGSVLDWNMS EAAATAPAAM ELTQPMEELE  300
YYQYYQLEEM MRCNNGVLPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973503.27e-93transcription factor TB1
TrEMBLA0A1E5VGN28e-81A0A1E5VGN2_9POAL; Uncharacterized protein
STRINGSi015230m3e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172