PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05979.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 125aa    MW: 14614.4 Da    PI: 6.3907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05979.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.9e-1411821587
                                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                            B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                                  +  +p +f ++hg+  ++  +++l+   grsW+v+l+   r  ++r+ ++ GW +F+ +ngL++gD++ F+++++
  Zmw_sc05979.1.g00040.1.sm.mk 11 MQNVPVEFQDAHGYARRR--QVVLR-MGGRSWTVNLKRgkRPFGDRTAFKYGWHQFCVDNGLEVGDTCFFHVVHE 82
                                  457899999999988665..45554.599*******6644444555*************************8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.082194IPR003340B3 DNA binding domain
CDDcd100171.17E-12178No hitNo description
SMARTSM010190.0074289IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-16782IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-21782IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-121383IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MPWHASRACC MQNVPVEFQD AHGYARRRQV VLRMGGRSWT VNLKRGKRPF GDRTAFKYGW  60
HQFCVDNGLE VGDTCFFHVV HERKALKEEE EEDDDDVKEE RVKEEEDDGH ALKVVSMNIT  120
PHVAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.11e-39B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.11e-39B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q265e-29Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A3L6THU72e-39A0A3L6THU7_PANMI; B3 domain-containing protein
STRINGPavir.Ia04671.1.p5e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]