PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05859.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 187aa    MW: 20782.3 Da    PI: 9.3607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05859.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12123168655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+I+ Lq
  Zmw_sc05859.1.g00040.1.sm.mkhc 123 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHINGLQ 168
                                     689*********************7....688****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.367117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-15120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-11121172No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10123168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKPSSHLNFT RAQQQAAGSS GHLTQMSEDG RAFPPGRIRG DRSSGESSGA ASRSFAGGFS  60
IVGPWEESRD IIVTLGAYDP QFSDAIASSA LERAGMDRYM QLQQDQVPFK VRAKRGCATH  120
PRSIAERERR TRISEKLRKL QELVPNMDKQ TSTADMLDLA VEHINGLQSE LQNLKNEQEK  180
CTCCRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.15e-96transcription factor bHLH128-like
SwissprotQ8H1024e-46BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1E5USQ61e-100A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]