PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05849.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 841aa    MW: 89043.1 Da    PI: 8.892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05849.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16584630455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Zmw_sc05849.1.g00010.1.am.mk 584 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 630
                                   5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-20577639IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-17577634No hitNo description
SuperFamilySSF474594.32E-20578640IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006580629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13584630IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-17586635IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MNPRHGRVAT HGRNNKRWTG DGDARETGQD RTGSRRTSEL ARAPTGQDAP PVGVRWPGER  60
QRAREGAGNQ RSASRHGGGG WTYGTGANQK PGSTGSRIWR GSNASASRDA RGQLDFAGRP  120
VGAGRPLSPR AGIHAGRCRR RDTFSAGSLT NEFLAPLTSP CNRNTNGWVF PTCPPLPADP  180
SQWRHLLGFL GLGWWRVALN NSPRPLPLLV SILNLHTPNA TVPAPAPTAV LSRRAAPSPV  240
THLSPRQPPS RRCAVSPLVT RRNRPGDELA ELLWDSNCPA LRTTPHFPAA APFQPFTCSA  300
AGSSRANELL NKRHAVGAMD DDVAGLGGIP AVHHDHDHDA VPWLHCPVID DGDSDTAPLP  360
PEYCAGLLSP GYPGLHALPD PTPTVSDIAR SSSTGGAVVV PATRAVTPEA APAQPQPSAA  420
GEGVMNFTFF SRPLQRLQPS AAVAPPPSNL LESTTAAQTA ASRLRNTPLF SEQRMAWLQP  480
PKGPPRATAG APPATDRHHH AEAAATVTQN RMQQPPDARP PDTTAAVTTS SVCSGNGDRS  540
HDKRSSHHPT AECSVSPDED MDDEPGAVGR PTTRGTKRSR TAEVHNLSER RRRDRINEKM  600
RALQELIPNC NKIDKASMLE EAIEYLKTLQ LQVQLMSMGT GLCVPAAPML MQMQMPLVAP  660
PFPHLGMGLG FGAVGFDVLP RFAAAQFPCP VMPPGAVFGM PGQIVPSPLA PFAHVNGAAT  720
VEHREAAAAA APAPPGGGAA AGDRQPSVPV PLQATIDQNH HFFSGRPEAA APEADVTADD  780
AAYPRAVADR MHPWSCAAEF GLAAREAGVD LGSESLAAVS MRRYAESLLQ GVASRVREQA  840
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1588593ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662938.11e-135transcription factor APG isoform X2
SwissprotQ0JNI91e-69PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0A9P9871e-159A0A0A9P987_ARUDO; Uncharacterized protein
STRINGGRMZM2G062541_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]