PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05606.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 301aa    MW: 34367.5 Da    PI: 7.1651
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05606.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.6e-48661991128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekew.yfFskrdkkyatgkrknr 76 
                                   lppGfrF Ptdeel+ +yL++k+ + +++   +i+++d+y+++PwdLp +++++   +++e+ yfF+++ +ky++g r++r
  Zmw_sc05606.1.g00020.1.am.mk  66 LPPGFRFFPTDEELIIFYLARKAVDASFTS-ATIRDIDLYSFDPWDLPcQELQEtgdGQHECcYFFCTKGSKYSSGVRARR 145
                                   79*************************998.77**************9654443333444556****************** PP

                           NAM  77 atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   at+sgyWk+tgkdk+v+s+   g+lvg+kktLvfy grap+gekt Wvmhey+l
  Zmw_sc05606.1.g00020.1.am.mk 146 ATRSGYWKSTGKDKAVYSSaaAGRLVGTKKTLVFYGGRAPRGEKTGWVMHEYAL 199
                                   ******************9888899***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5258223IPR003441NAC domain
PROSITE profilePS5100551.80766223IPR003441NAC domain
PfamPF023651.3E-2567199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTSPRLGNVL HHESPQAPHV TLNDQLFAVI KWTSSYLRCR VDRSSLRKFV CTRMQVEHHK  60
RRVERLPPGF RFFPTDEELI IFYLARKAVD ASFTSATIRD IDLYSFDPWD LPCQELQETG  120
DGQHECCYFF CTKGSKYSSG VRARRATRSG YWKSTGKDKA VYSSAAAGRL VGTKKTLVFY  180
GGRAPRGEKT GWVMHEYALG DGSSSVLRRG AQSGWVICRA LMKDEDPSRD RKPETEETMQ  240
SHDADYFLPE LLECDDDRYN EPLNRSGEAQ DTSGVLDRRA EMSDASVDSV LLCGFYWNYD  300
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-416622320168NAC domain-containing protein 19
3swm_B1e-416622320168NAC domain-containing protein 19
3swm_C1e-416622320168NAC domain-containing protein 19
3swm_D1e-416622320168NAC domain-containing protein 19
3swp_A1e-416622320168NAC domain-containing protein 19
3swp_B1e-416622320168NAC domain-containing protein 19
3swp_C1e-416622320168NAC domain-containing protein 19
3swp_D1e-416622320168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683498.15e-74NAC domain-containing protein 100
SwissprotQ9FLJ29e-49NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5UJH13e-78A0A1E5UJH1_9POAL; NAC domain-containing protein 100
STRINGSi014973m2e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]