PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05316.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 363aa    MW: 39698.1 Da    PI: 8.4916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05316.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.4e-32542181128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                                   lp+G++F+Ptd+el+ e+L++kv+  +        ++++   i+   +i++++P++Lp  ++++  + +fF++ +k+y+tg
  Zmw_sc05316.1.g00060.1.sm.mk  54 LPAGVKFDPTDQELI-EHLEAKVRPGTaaapshplIDEFIPtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTG 132
                                   799************.99******999777775553333333776646**********.455566799************* PP

                           NAM  72 krknra............................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122
                                   +rk+r+                             ++ +W++tgk+++v++  g++ g+kk+Lv+y   g+++k++kt+Wv
  Zmw_sc05316.1.g00060.1.sm.mk 133 TRKRRKiqppsaatsssssapaahqqqqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRKPQKTNWV 212
                                   *****88**********************9998755789************.9999**********5547999999***** PP

                           NAM 123 mheyrl 128
                                   mh+y+l
  Zmw_sc05316.1.g00060.1.sm.mk 213 MHQYHL 218
                                   ****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3546139IPR003441NAC domain
PROSITE profilePS5100528.49154237IPR003441NAC domain
PfamPF023651.3E-1555218IPR003441NAC domain
SuperFamilySSF1019412.35E-35168237IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDGSASTAAI GSGGGGGHHI PRLGIQEQRK YMSESSCCPR CGHKINRLLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGTA AAPSHPLIDE FIPTIEGEDG ICYTHPEKLP GLTKDGLSRH  120
FFHRPSKAYT TGTRKRRKIQ PPSAATSSSS SAPAAHQQQQ QQQQQQRSET RWHKTGKTRP  180
VVVAGRQRGC KKILVLYTNF GKHRKPQKTN WVMHQYHLGE AEEEREGELV VSKIFYQTQP  240
RQCGVAEPSA SSSAPTVEMS DHAAAAVPVA TSSGNAGVAF QGSAVGIDEF NFAQFRSSFE  300
EEDGRPHQPE KFDGRRTSGL EEVIMGCTSR RSKGTETSGG GSKASTDWQY PSFWPSDSQD  360
HHG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399940.11e-145NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-105NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3L6DFR41e-149A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRINGGRMZM2G115721_P011e-167(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]