PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05246.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 429aa    MW: 46390 Da    PI: 9.503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05246.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-20258307255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Zmw_sc05246.1.g00010.1.sm.mk 258 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 307
                                   59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.20E-32257315No hitNo description
SuperFamilySSF541712.22E-22258315IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-32258316IPR001471AP2/ERF domain
SMARTSM003802.2E-37258321IPR001471AP2/ERF domain
PROSITE profilePS5103223.117258315IPR001471AP2/ERF domain
PfamPF008472.6E-13259307IPR001471AP2/ERF domain
PRINTSPR003678.6E-11259270IPR001471AP2/ERF domain
PRINTSPR003678.6E-11281297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLAWLRVHGP GLALLYKALA GRPLLPQRDA STHPRPPTNE EHHQATSHIL FHSTVRLSDL  60
SKPLGRRSDR QARTDAKKGP LHPSFHLVLM AAAIDMYKYN TGSTHQIPSA SDQELMKALE  120
PFITSASSSS SSSPYNYYSS PSSSITQDSF MSTPSYTSLA TPPLPTTDAT SSSSFSQLPP  180
LYSSPYAGQA TPSMTGPMGL THLSPAQIQQ IQAQFLLQQQ QQRGLHAAFL GPRVQPMKQS  240
GSPPRGALAA AGAAQSKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEDAALAYDK  300
AAFRLRGDMA RLNFPSLRRG GAHLAGPLQA SIDAKLTSIC QSLAGASSSK NGSPASDSAA  360
SSPESPKSSA STEEEEESVS AGSPPSPTFS PPVPEMAKLD FTEAPWDETE AFHLRKYPSW  420
EIDWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21254315163ATERF1
3gcc_A2e-21254315163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183842.11e-149putative AP2/EREBP transcription factor superfamily protein
RefseqXP_025807978.11e-149ethylene-responsive transcription factor ERF060-like
TrEMBLA0A3L6RQH81e-153A0A3L6RQH8_PANMI; Ethylene-responsive transcription factor RAP2-4-like
STRINGGRMZM2G029323_P011e-149(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203