PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05221.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 485aa    MW: 53124.4 Da    PI: 6.7895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05221.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-19231280255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++a +++++g
  Zmw_sc05221.1.g00070.1.am.mkhc 231 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 280
                                     69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-36231294IPR001471AP2/ERF domain
CDDcd000181.17E-31231290No hitNo description
Gene3DG3DSA:3.30.730.103.0E-31231289IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21231289IPR016177DNA-binding domain
PROSITE profilePS5103223.709231288IPR001471AP2/ERF domain
PfamPF008471.0E-11232280IPR001471AP2/ERF domain
PRINTSPR003674.1E-10232243IPR001471AP2/ERF domain
PRINTSPR003674.1E-10254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MHLMTVNCHH PVPSPSQPSS LLVVPCTDAL ADVGTPPRVP APTRLHRAPH SQPYKTARPS  60
LAARHCLVRP GKKKGSFTIP NPFAFPIHTR FPLLPFLRGG CGGARGADRT MCGGAILANL  120
TKHPEPRRRL TEGALWPEKK KPKRGGAGGR RQYPAGFVEE DDEDFEADFE EFEGDSGESD  180
LELGQGEDDD VVEIKPFAAK RNFTRDGLST MTTANFDGPA ARSAKRKRKN QYRGIRQRPW  240
GKWAAEIRDP RKGVRVWLGT YNSPEEAARA YDAEARRIRG KKAKVNFPDT PTGVQKRRAS  300
PAAARAPKSS FEQKPAVKAA MNNPINTNGS CCPSADYTSN KQVVQLDDLT FSPAINSPAP  360
NEDPIMNLHS DQGSNSFSYS DFGWENDTKT PDITSITPVS TIAEGDESEF VNKNSNGSLV  420
PPVMDNNPVD LTDGLTDLEP YMRFILDGGA SESIDSLLNL DGSQDVLSNM DLWSFDDMPI  480
SGDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18230288160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-18231288563ATERF1
3gcc_A3e-18231288563ATERF1
5wx9_A5e-182312881472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816350.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-164ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6RNH80.0A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRINGPavir.Aa00281.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]